<\/title>\n\n <link rel=\"stylesheet\" href=\"\/\/code.jquery.com\/ui\/1.13.2\/themes\/base\/jquery-ui.css\">\n<script src=\"https:\/\/code.jquery.com\/jquery-3.6.0.min.js\"><\/script>\n<script src=\"https:\/\/code.jquery.com\/jquery-migrate-1.4.1.min.js\"><\/script>\n <script src=\"https:\/\/code.jquery.com\/ui\/1.13.2\/jquery-ui.js\"><\/script>\n\n\n\n<link rel=\"stylesheet\" href=\"https:\/\/cdn.jsdelivr.net\/npm\/bootstrap@4.5.3\/dist\/css\/bootstrap.min.css\" integrity=\"sha384-TX8t27EcRE3e\/ihU7zmQxVncDAy5uIKz4rEkgIXeMed4M0jlfIDPvg6uqKI2xXr2\" crossorigin=\"anonymous\">\n<script src=\"https:\/\/cdn.jsdelivr.net\/npm\/bootstrap@4.5.3\/dist\/js\/bootstrap.bundle.min.js\" integrity=\"sha384-ho+j7jyWK8fNQe+A12Hb8AhRq26LrZ\/JpcUGGOn+Y7RsweNrtN\/tE3MoK7ZeZDyx\" crossorigin=\"anonymous\"><\/script>\n\n<link rel=\"stylesheet\" type=\"text\/css\" href=\"https:\/\/cdn.datatables.net\/v\/dt\/dt-1.13.1\/datatables.min.css\"\/>\n \n<script type=\"text\/javascript\" src=\"https:\/\/cdn.datatables.net\/v\/dt\/dt-1.13.1\/datatables.min.js\"><\/script>\n\n\n<style>\n body{\n font-family: Arial, sans-serif;\n }\n\n.search-box , .div-py{\n margin:5%;\n margin-left:10%;\n width: 80%;\n position: relative;\n display:inline-block;\n font-size: 22px;\n padding-bottom: 0px;\n }\n .search-box select , .div-py select {\n height: 60px;\n padding: 5px 10px;\n border: 1px solid #CCCCCC;\n font-size: 22px;\n max-height: 100px;\n background-color:#DFDEDE;\n }\n .search-box input[type=\"text\"] {\n height: 60px;\n padding: 5px 10px;\n border: 1px solid #CCCCCC;\n font-size: 22px;\n max-height: 100px;\n background-color:#DFDEDE;\n }\n .search-box input[type=\"number\"] { \n height: 60px;\n padding: 5px 10px;\n border: 1px solid #CCCCCC;\n font-size: 22px;\n max-height: 100px;\n background-color:##DFDEDE;\n }\n .result{\n z-index: 999;\n top: 100%;\n left: 0;\n overflow: auto;\n opacity: 1;\n }\n .search-box input[type=\"text\"], .result{\n width: 100%;\n box-sizing: border-box;\n max-height: 115px;\n opacity: 1;\n }\n .result p{\n margin: 0;\n padding: 7px 10px;\n border: 1px solid #CCCCCC;\n border-top: none;\n cursor: pointer;\n max-height: 100px;\n }\n .result p:hover{\n background: #f2f2f2;\n max-height: 100px;\n }\n\n .button{ \n float:right; \n background-color: #4CAF50; \n border: none;\n color: white;\n height: 10%;\n text-align: center;\n text-decoration: none;\n font-size: 10px;\n }\n#carouseldiv{\n display: inline-block;\n}\n\ninput[type=\"radio\"]{\n height: 20px;\n width: 15px;\n}\n.site-content{\n height: auto;\n}\n\n\n#selectdata h3{\n display:inline;\n}\n\n\n #gifbt {\n position: absolute;\n left: 45%;\n top: 60%;\n width: 5%;\n height: 50%;\n }\n #gifbt2 {\n position: absolute;\n left: 45%;\n top:40%;\n width: 5%;\n height: 10%;\n }\n \n\n .form-control:focus {\n border-color: #0000FF;\n box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(102,205,170, 0.6);\n}\n\n #column , .search-py{\n background-color:white;\n width: 100%;\n border-radius: 10px;\n \/*box-shadow: 5px 10px #f1f1f1;*\/\n \n }\n \n #divtable ,#divtable2 , #divtable3{\n background-color:white; \n border-radius: 10px;\n font-size:22px; \nwidth:auto; \nmargin-top:2%;\n }\n \n\n #titletable{\n margin-top:2%;\n text-align:center; \n }\n #selectdata h2{\n display:inline; \n text-align:center; \n font-size:2em;\n\n\n }\n #divtable h2 , #divtable2 h2 , #divtable3 h2 {\n display:inline; \n }\n#divtable .dataTables_wrapper,\n#divtable2 .dataTables_wrapper ,\n#divtable3 .dataTables_wrapper{\n width: 80%;\n margin: 2%;\n margin-left: 10%;\n margin-right: 10%;\n font-size:22px;\n}\nh1 {\n font-size:2em;\n}\n\n .helpresult{\n z-index: 999;\n top: 100%;\n left: 10%;\n overflow: auto;\n opacity: 1;\n }\n #divtable p , #divtable2 p , #divtable3 p {\n color: black !important ;\n }\n .helpresult p , .helpresult h2 , #enrichp{\n font-size:0.9vw;\n margin: 0;\n margin-left:2%;\n font-style:italic;\n max-height: 100px;\n }\n \n .dataTables_length, .dataTables_length select\n { \n font-size: 1.5em;\n \n }\n .popover{\n font-size: 2em;\n\n }\n caption {\n text-align:center;\n font-style:italic;\n caption-side:top;\n }\n #modaldesc , #modaldesc2 {\ntop:10%;\n}\n.btn-secondary{\n width:20%;\n font-size:16px;\n margin-left:10%;\n}\n\n.btn-primary {\n width:10%;\n font-size:16px;\n margin-left:40%;\n }\n\n\n \n<\/style>\n<\/head>\n<body>\n\n\n\n\n<script>\njQuery(document).ready(function($) {\n $('[data-toggle=\"popover\"]').popover();\n var info = $('.info');\n info.mouseenter(function() {\n $(this).popover('show');\n });\n \/\/ Hide the popover when the user's mouse leaves the button\n info.mouseleave(function() {\n $(this).popover('hide');\n });\n \n var thead = $('th');\n thead.mouseenter(function() {\n $(this).popover('show');\n });\n thead.mouseleave(function() {\n $(this).popover('hide');\n });\n })\n<\/script>\n\n<div id=\"column\">\n\n<div class=\"search-box\">\n\n Food or bioactive compound <img id=\"datahelp1\" class=\"help \"src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\" \/>\n <div class=\"helpresult\" id=\"help1\"><\/div>\n <input type=\"text\" id=\"key\" class=\"key form-control\" placeholder='Resveratrol'>\n <div class=\"result\" id=\"result\"><\/div>\n <br>\n Cell line\/Sample type <img id=\"datahelpsample\" class=\"help \"src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\" \/>\n <div class=\"helpresult\" id=\"helpsample\"><\/div>\n <input type=\"text\" id=\"origen\" class=\"key form-control\" placeholder=''>\n <div class=\"result\" id=\"result2\"><\/div>\n<\/div> \n <\/div>\n\n <div id='divtable'>\n\n<table id=\"table\" class=\"hover\" style=\"width:100%\">\n <caption> Click in the row of interest to get more information <\/caption>\n <thead><\/thead>\n<\/table>\n<\/div>\n\n <img decoding=\"async\" id=\"gifbt2\" src=\"https:\/\/upload.wikimedia.org\/wikipedia\/commons\/2\/2a\/Loading_Key.gif\" width=\"250\" \/>\n\n\n <div id='divtable2'>\n <div class=\"modal fade\" id=\"modaldesc\" role=\"dialog\">\n <div class=\"modal-dialog\">\n <div class=\"modal-content\">\n <div class=\"modal-header\">\n <button type=\"button\" class=\"close\" data-dismiss=\"modal\" aria-label=\"Close\">\n <span aria-hidden=\"true\">×<\/span>\n <\/button>\n <\/div>\n <div class=\"modal-body\">\n <button type=\"button\" id='copy' class=\"btn btn-secondary\">copy\n <img id=\"datahelpcopy\" class=\"help \"src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\" \/> \n <\/button>\n <button type=\"button\" id='tsv' class=\"btn btn-secondary\">TSV<\/button>\n <button type=\"button\" id='csv' class=\"btn btn-secondary\">CSV<\/button>\n \n <div class=\"helpresult\" id=\"helpcopy\"><\/div>\n\n <\/div>\n <\/div>\n <\/div>\n<\/div>\n\n <br>\n<h1 id='titletable'>Upregulated genes<\/h1>\n<button type=\"button\" class=\"btn btn-primary\" data-toggle=\"modal\" data-target=\"#modaldesc\">\nDownload\n<\/button>\n<table id=\"table1\" class=\"stripe\" style=\"width:100%\">\n<\/table>\n<\/div>\n\n <div id='divtable3'>\n <div class=\"modal fade\" id=\"modaldesc2\" role=\"dialog\">\n <div class=\"modal-dialog\">\n <div class=\"modal-content\">\n <div class=\"modal-header\">\n <button type=\"button\" class=\"close\" data-dismiss=\"modal\" aria-label=\"Close\">\n <span aria-hidden=\"true\">×<\/span>\n <\/button>\n <\/div>\n <div class=\"modal-body\">\n <button type=\"button\" id='copy' class=\"btn btn-secondary\">copy\n <img id=\"datahelpcopy2\" class=\"help \"src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\" \/> \n <\/button>\n <button type=\"button\" id='tsv' class=\"btn btn-secondary\">TSV<\/button>\n <button type=\"button\" id='csv' class=\"btn btn-secondary\">CSV<\/button>\n \n <div class=\"helpresult\" id=\"helpcopy2\"><\/div>\n\n <\/div>\n <\/div>\n <\/div>\n<\/div>\n\n <br>\n<h1 id='titletable'>Downregulated genes<\/h1>\n<button type=\"button\" class=\"btn btn-primary\" data-toggle=\"modal\" data-target=\"#modaldesc2\">\nDownload\n<\/button>\n<table id=\"table2\" class=\"stripe\" style=\"width:100%\">\n\n \n<\/table>\n <\/div>\n\n <div class=\"search-py\">\n <div class=\"div-py\">\n <div id=\"selectdata\"><h2>Pathway enrichment analysis<\/h2> <img id=\"datahelpenrich\" class=\"help \"src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\" \/>\n <div class=\"helpresult\" id=\"helpenrich\"><\/div>\n <p id='enrichp'>Click on the box to display the differents pathways options<\/p>\n<select id=\"selecten\">\n <option value=\"wiky\">WIKIPATHWAYS<\/option>\n<option value=\"molecular\">GO MOLECULAR FUNCTION<\/option>\n<option value=\"biological\">GO BIOLOGICAL PROCESS<\/option>\n<option value=\"celullar\">GO CELULAR COMPONENT<\/option>\n<option value=\"reactome\">REACTOME<\/option>\n<\/select>\n<img decoding=\"async\" id=\"gifbt\" src=\"https:\/\/upload.wikimedia.org\/wikipedia\/commons\/2\/2a\/Loading_Key.gif\" width=\"250\" \/>\n<br>\n<button id=\"enrichment\" class=\"button\" >Run enrichment analysis<\/button>\n<br>\n<\/div>\n<\/div>\n\n\n\n\n\n\n\n\n\n<script>\n \/\/ Define variables and set hide values for css\n$(\"#gifbt\").hide();\n$(\".search-py\").hide();\n$(\"#gifbt2\").hide();\n\n $(\"#divtable\").hide();\n $(\"#divtable2\").hide();\n $(\"#divtable3\").hide();\n\n $(\"#headertable\").hide();\n $(\"#data\").hide();\n $(\"#data2\").hide();\n $(\"#data3\").hide();\n var valortrue = false;\n $(\".tituloupdn\").hide();\n var datosup=[];\n var datosdn=[];\n var d2=[];\n $(\".descarga\").hide();\n var arraynom = [\"accession\" ,\"node_id\",\"treatment\",\"time_point\",\"concentration\", \"origin_name\"];\n var arraynom2 = [\"Entrezgene_ID\",\"External_Gene_Name\",\"Description\"];\nvar verdadero=false;\nvar idloaddata2 =1;\nvar pathway;\nvar longi2;\nvar nregis=2;\nvar dataset;\nvar nregis2=10;\nvar nregis3=10;\nvar datasecure2={};\nvar datasecure3={};\nvar datanew = {};\nvar datanew2 = {};\nvar datanew3 = {};\nvar datos={};\nvar datos2={};\nvar datos4={};\nvar type=2;\nvar botonvalor =\"fdrug\";\nvar provisional=1;\nvar datacharge=true;\nvar datacharge2=true;\nvar datacharge3=true;\nvar table;\nvar table2;\nvar table3;\nvar orden=\"\";\n var datadescarga2 ={};\n var datadescarga={};\n \n \n \njQuery(document).ready(function($) {\n\n\n \/\/Keyup event to fill the div which will show the autocomplete suggestions\n $('.key').on('keyup input', function() { \n \/\/We get the value and the id of the input.\nvar key = $(this).val();\norden = $(this).attr(\"id\");\n\/\/We check that the value is not null or empty\nif(key != \"\"){\n \/\/We make a request to ajax that redirects us to another script where the Mysql query will be executed and will return the first 5 records similar to what is being searched for\n jQuery.ajax({\n url:'https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/geneset\/ajaxsql.php',\n type: 'post',\n data: {search:key, type:1,orden:orden},\n dataType: 'json',\n success:function(response){\n \/\/Here in this if we check which of the two inputs is the one being written\n \/\/We get the length of the response and add one by one the response in the div\n if (orden==\"key\") {\n var len = response.length;\n $(\"#result\").empty();\n for( var i = 0; i<len; i++){\n var name = response[i]['name'];\n $(\"#result\").append(\"<p>\"+name+\"<\/p>\");\n } \n }else {\n var len = response.length;\n $(\"#result2\").empty();\n for( var i = 0; i<len; i++){\n var name = response[i]['name'];\n $(\"#result2\").append(\"<p>\"+name+\"<\/p>\");\n }\n }\n }, error: function(XMLHttpRequest, textStatus, errorThrown) { \n alert(\"Status: \" + textStatus); alert(\"Error: \" + errorThrown); \n } \n });\n}else {\n \/\/If the answer is empty, the result is cleaned\n $(\".result\").empty();\n}\n})\n\n\/\/Help events, when the event is activated the text is shown to indicate the instructions and when it ends everything is hidden\n\n$(document).on(\"mouseenter\", \".help\", function(){\n$(\".helpresult\").empty();\nvar idhelp = $(this).attr(\"id\");\nif (idhelp==\"datahelp1\") {\n $(\"#help1\").append(\"<p>Type the term of interest. If FooDrugs database doesn't have experiments with the query term a \u201cNo Results Found\u201d message will appear.<\/p>\");\n \n} else if (idhelp==\"datahelpsample\") {\n $(\"#helpsample\").append(\"<p>Allow you to filter by cell line or sample type. If FooDrugs database doesn't have cell lines or sample types with the query term a \u201cNo Results Found\u201d message will appear.<\/p>\");\n\n}\nelse if (idhelp==\"datahelpentries\") {\n $(\"#helpentries\").append(\"<p>Allow you to filter the number of studies to display<\/p>\");\n \n} \nelse if (idhelp==\"datahelpfilter\") {\n $(\"#helpfilter\").append(\"<p>Allow you to filter with free text on the table by any field<\/p>\");\n \n} else if (idhelp==\"datahelpentries2\") {\n $(\"#helpentries2\").append(\"<p>Allow you to filter the number of studies to display<\/p>\");\n \n} \nelse if (idhelp==\"datahelpfilter2\") {\n $(\"#helpfilter2\").append(\"<p>Allow you to filter with free text on the table by any field<\/p>\");\n \n}else if (idhelp==\"datahelpentries3\") {\n $(\"#helpentries3\").append(\"<p>Allow you to filter the number of studies to display<\/p>\");\n \n} \nelse if (idhelp==\"datahelpfilter3\") {\n $(\"#helpfilter3\").append(\"<p>Allow you to filter with free text on the table by any field<\/p>\");\n \n}\nelse if(idhelp==\"datahelpenrich\"){\n $(\"#helpenrich\").append(\"<p>Allow to perform enrichment analysis with the top overexpressed and underexpressed genes showed in the tables.<\/p>\");\n\n}else if (idhelp==\"datahelpcopy\"){\n $(\"#helpcopy\").append(\"<p>Allow to copy the information on the clipboard<\/p>\");\n\n}else if (idhelp==\"datahelpcopy2\"){\n $(\"#helpcopy2\").append(\"<p>Allow to copy the information on the clipboard<\/p>\");\n\n}\n\n\n\n});\n\n $(document).on(\"mouseleave\", \".help\", function(){\n $(\".helpresult\").empty();\n });\n\n\/\/Events to go up or down in the page\n $(document).on(\"mouseover\", \"#gncontainer3\", function(){\n $(\"#cambioupdn\").text(\"UP\");\n $(\"#cambioupdn\").attr('href', '#headertable2');\n });\n \n $(document).on(\"mouseover\", \"#gncontainer2\", function(){\n $(\"#cambioupdn\").text(\"DN\");\n $(\"#cambioupdn\").attr('href', '#headertable3');\n });\n \n\/\/CLICK event on any of the input options\n$(document).on(\"click\", \".result p\", function(){\n \/\/Check what input is clicked and call showtables function\n if (orden==\"key\") {\n $('#result').empty(); \n $('#'+orden).val($(this).text());\n mostrartablas();\n\n }else{\n $('#result2').empty(); \n $('#'+orden).val($(this).text());\n \/\/Check the value of the first input to call the function\n if ($('#key').val()!=null) {\n mostrartablas();\n }\n }\n });\n\n\n\n\n\n\n\/\/Function mostrartablas \n\nfunction mostrartablas(){\n \/\/Get the value of the two inputs\n\n var key = $('#key').val();\n var key2 = $(\"#origen\").val();\n valortrue = false;\n $.ajax({\n url:'https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/geneset\/ajaxsql.php',\n type: 'post',\n data: {search:key,search2:key2, type:3},\n dataType: 'json',\n success:function(response){\n console.log(response)\n \/\/Get the values \u200b\u200bfrom the ajax response and set, check and display the various parameters\/variables\n let pages = 0;\n datos['a']=response;\n datanew=response;\n datos['type']=type;\n $(\"#headertable\").show();\n $(\"#pagination_data\").empty();\n $(\"#content\").empty();\n var len = response.length;\n if ((response[0]['compound'] != undefined && response[0]['treatment'] == undefined) || (response[0]['treatment'] != undefined && response[0]['compound'] == undefined) ) {\n var datatable = [];\n \n \n for (let index = 0; index < response.length; index++) {\n datatable[index]=[];\nfor (var value in response[index]){ \n datatable[index].push(response[index][value]);\n}\n}\nif(datacharge==true){\n datacharge=false;\n}else {\n table.destroy();\n}\n $(\"#table\").show();\n\n table = $('#table').DataTable({\n \n\n data: datatable,\n \n columns: [\n { title: \"<span tabindex='0' data-toggle='popover' data-content='GEO study identifier click on the word to go to the original information source'> Accession <img src='http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png' width='15' \/> <\/span>\" ,\n \"render\": function (data, type, row) {\n return '<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/geo\/query\/acc.cgi?acc=GSE' + data + '\" target=\"no_blank\">' + data + '<\/a>';\n }\n },\n { title: \"Treatment\" },\n { title: \"Time Point\" },\n { title: \"Concentration\" },\n { title: \"Cell line\/Sample type\" },\n \n ],\n language: {\n \"lengthMenu\": '<h2> Show entries <\/h2> <img decoding=\"async\" class=\"help\" id=\"datahelpentries\" src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\"><\/img> <div class=\"helpresult\" id=\"helpentries\"><\/div> _MENU_ ' ,\n \"search\": ' <h2> Filter Records<\/h2> <img decoding=\"async\" class=\"help\" id=\"datahelpfilter\" src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\"><\/img> <div class=\"helpresult\" id=\"helpfilter\"><\/div> _INPUT_' \n },\n });\n \n $('[data-toggle=\"popover\"]').popover({\n 'trigger': 'hover',\n});\n$(\"#divtable\").show();\n }\n } ,error: function(XMLHttpRequest, textStatus, errorThrown) { \n alert(\"Status: \" + textStatus); alert(\"Error: \" + errorThrown); \n } \n });\n}\n\n\n\n\n\n\/\/--->\n\/\/Function load_data , load_data2 and load_data3 are used to load the information to the tables shown on the page a is equal to the current page\n\/\/the same for all functions\n\n\n function load_data2(){\n $(\"#divtable2\").show();\n var d2 = [];\n var ids = [];\n j=0;\n for( var i = 0; i<datanew2.length; i++){\n d2[j]=datanew2[i].split('\\t');\n id=d2[j][0];\n if(!ids.includes(id)){\n ids.push(id);\n for (var key in datosresponse['up'][id]) { \n d2[j].push(datosresponse['up'][id][key]);\n }\n }\n if(d2[j].length!=6){\n d2.splice(j, 1);\n \n j--\n \n }\n j++;\n\n\n }\n datanew2=d2;\n if(datacharge2==true){\n datacharge2=false;\n}else {\n table2.destroy();\n}\n\n table2 = $('#table1').DataTable({\n data: d2,\n columns: [\n { title: \"<span id='tablepopover' tabindex='0' data-toggle='popover' data-content='To know more about the gene click on it '> EntrezGene ID <img src='http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png' width='15' \/> <\/span>\" ,\n \"render\": function (data, type, row) {\n return '<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/gene\/' + data + '\" target=\"no_blank\">' + data + '<\/a>';\n }\n \n },\n { title: \"External Gene Name\" },\n { title: \"Description \", \"width\": \"25%\" },\n { title: \"logFC\" ,\n \"render\": function (data, type, row) {\n return round(data);\n }\n },\n { title: \"Adjusted P_Value\",\n \"render\": function (data, type, row) {\n return round(data);\n }},\n { title: \"P_Value\" ,\n \"render\": function (data, type, row) {\n return round(data);\n }\n },\n ],\n language: {\n \"lengthMenu\": '<h2> Show entries <\/h2> <img decoding=\"async\" class=\"help\" id=\"datahelpentries2\" src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\"><\/img> <div class=\"helpresult\" id=\"helpentries2\"><\/div> _MENU_' ,\n \"search\": ' <h2> Filter Records<\/h2> <img decoding=\"async\" class=\"help\" id=\"datahelpfilter2\" src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\"><\/img> <div class=\"helpresult\" id=\"helpfilter2\"><\/div> _INPUT_' \n },\n });\n \n $('[data-toggle=\"popover\"]').popover({\n 'trigger': 'hover',\n});\n }\n \nfunction round(num) {\n var m = Number((Math.abs(num) * 1000).toPrecision(15));\n return Math.round(m) \/ 1000 * Math.sign(num);\n}\n function load_data3(){\n $(\"#divtable3\").show();\n\n var d3 = [];\n j=0\n var ids = [];\n for( var i = 0; i<datanew3.length; i++){\n d3[j]=datanew3[i].split('\\t');\n id=d3[j][0];\n if(!ids.includes(id)){\n ids.push(id);\n for (var key in datosresponse['dn'][id]) { \n d3[j].push(datosresponse['dn'][id][key]);\n }\n }\n if(d3[j].length!=6){\n d3.splice(j, 1);\n j--\n \n }\n j++;\n \n \n }\n \n if(datacharge3==true){\n datacharge3=false;\n}else {\n table3.destroy();\n}\n table3 = $('#table2').DataTable({\n data: d3,\n columns: [\n { title: \"<span id='tablepopover' tabindex='0' data-toggle='popover' data-content='To know more about the gene click on it '> EntrezGene ID <img src='http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png' width='15' \/> <\/span>\" ,\n \"render\": function (data, type, row) {\n return '<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/gene\/' + data + '\" target=\"no_blank\">' + data + '<\/a>';\n }\n \n },\n { title: \"External Gene Name\" },\n { title: \"Description \", \"width\": \"25%\" },\n{ title: \"logFC\" ,\n \"render\": function (data, type, row) {\n return round(data);\n }\n },\n { title: \"Adjusted P_Value\",\n \"render\": function (data, type, row) {\n return round(data);\n }},\n { title: \"P_Value\" ,\n \"render\": function (data, type, row) {\n return round(data);\n }\n },\n ],\n language: {\n \"lengthMenu\": '<h2> Show entries <\/h2> <img decoding=\"async\" class=\"help\" id=\"datahelpentries3\" src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\"><\/img> <div class=\"helpresult\" id=\"helpentries3\"><\/div> _MENU_' ,\n \"search\": ' <h2> Filter Records<\/h2> <img decoding=\"async\" class=\"help\" id=\"datahelpfilter3\" src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\"><\/img> <div class=\"helpresult\" id=\"helpfilter3\"><\/div> _INPUT_' \n },\n });\n $('[data-toggle=\"popover\"]').popover({\n 'trigger': 'hover',\n});\n }\n\/\/<---\n\n\n\/\/table click event \n $(document).on('click', '#table tbody tr', function() { \n$(\".highlight\").css({'background-color': \"transparent\" });\n $( '.highlight' ).removeClass( \"highlight\" );\n $(this).css(\"background-color\",\"#CDCDCD\");\n var row = table.row( this ).data()\n $( this ).addClass( \"highlight\" );\n var nodeid = row[5];\n var x;\n $(\"#gifbt2\").show();\n\/\/First make an ajax request and get the up and dn nodes\n \/\/These data are stored in an array and sent to a script that will obtain and save the information obtained\n \/\/Then we make another request to read the created file\n $.ajax({\n url:'https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/geneset\/ajaxsql.php',\n type: 'post',\n data: {search:nodeid, type:2},\n dataType: 'json',\n success:function(response){\n datos2={};\n datosresponse={}\n datos2=response;\n datosresponse['up']={};\n console.log(datos2.length);\n datosresponse['dn']={};\n for( var i = 0; i< datos2.length; i++){\n iddn=\"\";\n if(datos2[i]['up']!=null){\n idup=\"\";\n idup=datos2[i]['up']['id'];\n datosup[i]=idup;\n datosresponse['up'][idup]=datos2[i]['up'][idup];\n }\n if(datos2[i]['dn']!=null){\n iddn=\"\";\n iddn=datos2[i]['dn']['id'];\n datosdn[i]=iddn;\n datosresponse['dn'][iddn]=datos2[i]['dn'][iddn];\n }\n }\n console.log(datosdn);\n valortrue = true;\n $.post('https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/geneset\/python.php', {idup:datosup,iddn:datosdn,type:1}).done(function(data){\n x=true;\n \n });\n \n $.ajax({\n url:'https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/geneset\/lectura.php',\n type: 'post',\n dataType: 'json',\n success:function(response){\n datanew2=\"\";\n datanew3=\"\";\n\/\/ The data is parsed to save it in an array and the blank spaces are deleted\ndatanew2=response['up'].split('\\n');\n datanew3=response['dn'].split('\\n');\n datanew2=datanew2.filter(function(n){return n; });\n datanew3=datanew3.filter(function(n){return n; });\n fundatadescarga();\nload_data2();\nload_data3();\n $(\"#gifbt2\").hide();\n $(\".search-py\").show();\n } }); \n \n }});\n }); \n\n\n\n\n\n\n\n\n\/\/Enrichment event\n$(document).on(\"click\", \"#enrichment\", function(){\n\/\/First it is verified that the things have been executed, then the values \u200b\u200bof the select are obtained\n if(valortrue==true){\n $(\"#gifbt\").show();\n var select = $(\"#selecten\");\n pathway=\"\";\n id=select.val();\n\/\/Depending on the id you have, one thing or another is executed\n\/\/type 2 for any of the options except for reactome\n if (id==\"molecular\") {\ntype=2;\ndataset=\"0003674\";\nenviar(dataset,type,pathway);\n }else if (id==\"biological\") {\n type=2; \n dataset=\"0008150\";\n enviar(dataset,type,pathway);\n }else if (id==\"celullar\") {\n type=2;\n dataset=\"0005575\";\n enviar(dataset,type,pathway);\n }else if (id==\"reactome\"){\n\/\/A first connection is made with reactome to obtain the token and be able to obtain all the pertinent data later\n var reactomeURI = 'https:\/\/reactome.org\/AnalysisService\/identifiers\/projection\/\\?pageSize\\=1\\&page\\=1';\n var dupnew = datosup.join(\"\\n\")\n\t\t\t\tvar dataUrl = '#EntrezGene\\n'+dupnew;\n\t\t\t\t$.ajax({\n\t\t\t\t\ttype: \"post\",\n\t\t\t\t\turl: reactomeURI,\n\t\t\t\t\tdata: dataUrl,\n\t\t\t\t\theaders: {\n\t\t\t\t\t\t\"Content-Type\": \"text\/plain\"\n\t\t\t\t\t},\n\t\t\t\t\tdataType: \"json\",\n\t\t\t\tsuccess:function(response){\n\t\t\t\tpathway=(response.pathwaysFound);\n\t dataset=response.summary.token;\n\/\/The second connection is made with reactome in type 3 obtaining the up genes\n\t $.post('https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/geneset\/python.php', {idup:datosup,iddn:datosdn,type:3,dataset:dataset,pathway:pathway}).done(function(data){\n\t });\n\t\t\t\t}\n\t\t\t\t});\n\t\t\t\n var ddnnew = datosdn.join(\"\\n\")\n\t\t\t\tvar dataUrl2 = '#EntrezGene\\n'+ddnnew;\n\t\t\t\t$.ajax({\n\t\t\t\t\ttype: \"post\",\n\t\t\t\t\turl: reactomeURI,\n\t\t\t\t\tdata: dataUrl2,\n\t\t\t\t\theaders: {\n\t\t\t\t\t\t\"Content-Type\": \"text\/plain\"\n\t\t\t\t\t},\n\t\t\t\t\tdataType: \"json\",\n\t\t\t\tsuccess:function(response){\n\/\/Type 4 is executed to obtain the dn genes\n\t\t\t\tpathway=(response.pathwaysFound);\n\t dataset=response.summary.token;\n\t type=4;\n\t \n\t enviar(dataset,type,pathway);\n\t\t\t\t}\n\t\t\t\t});\n }\n else if (id==\"wiky\") {\n $.post('https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/enrichment\/install.php').done(function(data){\n var url = 'http:\/\/imdeafoodcompubio.com\/index.php\/enrichment_geneset\/' ;\n var form = $('<form action=\"' + url + '\" method=\"post\" target=\"_blank\">' +\n '<input type=\"text\" name=\"text\"\/>' +\n '<\/form>');\n form.hide();\n $('body').append(form);\n form.submit(); \n $(\"#gifbt\").hide();\n });\n }\n }\n});\n\n\n\/\/ Send function is passed the dataset that has the database, the type that has to execute the script\n\/\/ and the pathway that only works for the reactome option\nfunction enviar(dataset,type,pathway){\n $.post('https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/geneset\/python.php', {idup:datosup,iddn:datosdn,type:type,dataset:dataset,pathway:pathway,database:id}).done(function(data){\n\/\/after obtaining the data, a form is executed that leads us to a page with the new information\n var url = 'http:\/\/imdeafoodcompubio.com\/index.php\/enrichment_geneset\/' ;\n var form = $('<form action=\"' + url + '\" method=\"post\" target=\"_blank\">' +\n '<input type=\"text\" name=\"text\"\/>' +\n '<\/form>');\n form.hide();\n $('body').append(form);\n form.submit(); \n $(\"#gifbt\").hide();\n });\n \n }\n \n\n\n\n\n\/\/Funcion para parsear la informacion para que el usuario pueda descargarla\n\/\/Se realiza un split de la informacion del array se almacena en una matriz\nfunction fundatadescarga (){\n \n for( var i = 0; i<datasecure2.length; i++){\n var d2=datasecure2[i].split('\\t'); \n datadescarga[i]=[];\n for (let j = 0; j < d2.length; j++) {\n \n \n datadescarga[i][j]=d2[j];\n \n \n }\n }\n for( var i = 0; i<datasecure3.length; i++){\n var d2=datasecure3[i].split('\\t'); \n datadescarga2[i]=[];\n for (let j = 0; j < d2.length; j++) {\n \n datadescarga2[i][j]=d2[j];\n }\n }\n\n}\n\n\n\/*\n$('.key').on('keyup click', function() { \n var key = $(this).val();\n if (key=='') {\n var stringclick = '';\n orden = $(this).attr(\"id\");\n jQuery.ajax({\n url:'https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/geneset\/ajaxsql.php',\n type: 'post',\n data: {search:stringclick, type:1,orden:orden},\n dataType: 'json',\n success:function(response){\n \/\/Here in this if we check which of the two inputs is the one being written\n \/\/We get the length of the response and add one by one the response in the div\n if (orden==\"key\") {\n var len = response.length;\n $(\"#result\").empty();\n for( var i = 0; i<len; i++){\n var name = response[i]['name'];\n $(\"#result\").append(\"<p>\"+name+\"<\/p>\");\n } \n }else {\n var len = response.length;\n $(\"#result2\").empty();\n for( var i = 0; i<len; i++){\n var name = response[i]['name'];\n $(\"#result2\").append(\"<p>\"+name+\"<\/p>\");\n }\n }\n }, error: function(XMLHttpRequest, textStatus, errorThrown) { \n alert(\"Status: \" + textStatus); alert(\"Error: \" + errorThrown); \n }\n });\n }\n}); *\/\n\n$(document).on('click', '#modaldesc .btn-secondary', function() {\n \/\/Get the page where you are and what type of download it iss\n var subid= $(this).attr(\"id\");\n\/\/Copy with the obtained data, with this it is added to an input and the copy command is executed later the input is deleted\n \/\/ With this is on the clipboard\n\/\/We remove the fields from the strati num text yendi array so that there is no information \/\/irrelevant for the user\n if (subid == \"copy\" ) {\n dataacopiar=[];\n copy=\"\";\n for (let i = 0; i < datanew2.length || i < 10 ; i++) {\n dataacopiar[i]={};\n for (var dato in datanew2[i]){\n copy=copy+datanew2[i][dato];\n\n}\n}\n $('<input id=\"textcopy\">').val(copy).appendTo('body').select(); \n document.execCommand('copy'); \n var el = document.getElementById('textcopy');\n el.remove();\n }\n \/\/TSV OR CSV the file is sent to descargararchivo.php and the associative array is sent\n else {\n dataacopiar=[];\n console.log(datanew2);\n for (let i = 0; i < datanew2.length; i++) {\n dataacopiar[i]={};\n for (var dato in datanew2[i]){\n dataacopiar[i][dato]=datanew2[i][dato];\n\n}\n}\n $.ajax({\n url:'https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/descargararchivo.php',\n type: 'post',\n data: {key:subid,data:dataacopiar,name:\"tablegenesetup\",arrkeys:arraynom2},\n dataType: 'json',\n success:function(response){\n \/\/Get the name of the file which is on the response and create an element <a> and add the attribute\n \/\/'download' and indicate where the file is located and order the element to be clicked\n \/\/and start the download\n fileName=response;\n fileUrl=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/desc\/\"+fileName;\n var a = document.createElement(\"a\");\n a.href = fileUrl;\n a.setAttribute(\"download\", fileName);\n a.click();\n }\n });\n }\n });\n\n\n$(document).on('click', '#modaldesc2 .btn-secondary', function() {\n \/\/Get the page where you are and what type of download it iss\n var subid= $(this).attr(\"id\");\n\/\/Copy with the obtained data, with this it is added to an input and the copy command is executed later the input is deleted\n \/\/ With this is on the clipboard\n\/\/We remove the fields from the strati num text yendi array so that there is no information \/\/irrelevant for the user\n if (subid == \"copy\" ) {\n dataacopiar=[];\n copy=\"\";\n for (let i = 0; i < datanew3.length || i < 10 ; i++) {\n dataacopiar[i]={};\n for (var dato in datanew3[i]){\n copy=copy+datanew3[i][dato];\n\n}\n}\n $('<input id=\"textcopy\">').val(copy).appendTo('body').select(); \n document.execCommand('copy'); \n var el = document.getElementById('textcopy');\n el.remove();\n }\n \/\/TSV OR CSV the file is sent to descargararchivo.php and the associative array is sent\n else {\n dataacopiar=[];\n console.log(datanew2);\n for (let i = 0; i < datanew3.length; i++) {\n dataacopiar[i]={};\n for (var dato in datanew3[i]){\n dataacopiar[i][dato]=datanew3[i][dato];\n\n}\n}\n $.ajax({\n url:'https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/descargararchivo.php',\n type: 'post',\n data: {key:subid,data:dataacopiar,name:\"tablegenesetdn\",arrkeys:arraynom2},\n dataType: 'json',\n success:function(response){\n \/\/Get the name of the file which is on the response and create an element <a> and add the attribute\n \/\/'download' and indicate where the file is located and order the element to be clicked\n \/\/and start the download\n fileName=response;\n fileUrl=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/desc\/\"+fileName;\n var a = document.createElement(\"a\");\n a.href = fileUrl;\n a.setAttribute(\"download\", fileName);\n a.click();\n }\n });\n }\n });\n\n\n });\n\n <\/script>\n\n<\/body>\n<\/html>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-15","page","type-page","status-publish","hentry","no-thumb"],"_links":{"self":[{"href":"https:\/\/imdeafoodcompubio.com\/index.php\/wp-json\/wp\/v2\/pages\/15","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/imdeafoodcompubio.com\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/imdeafoodcompubio.com\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/imdeafoodcompubio.com\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/imdeafoodcompubio.com\/index.php\/wp-json\/wp\/v2\/comments?post=15"}],"version-history":[{"count":3,"href":"https:\/\/imdeafoodcompubio.com\/index.php\/wp-json\/wp\/v2\/pages\/15\/revisions"}],"predecessor-version":[{"id":604,"href":"https:\/\/imdeafoodcompubio.com\/index.php\/wp-json\/wp\/v2\/pages\/15\/revisions\/604"}],"wp:attachment":[{"href":"https:\/\/imdeafoodcompubio.com\/index.php\/wp-json\/wp\/v2\/media?parent=15"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}

{"id":15,"date":"2021-03-04T12:07:35","date_gmt":"2021-03-04T12:07:35","guid":{"rendered":"http:\/\/imdeafoodcompubio.com\/?page_id=15"},"modified":"2023-08-03T08:25:14","modified_gmt":"2023-08-03T08:25:14","slug":"gene_sets","status":"publish","type":"page","link":"https:\/\/imdeafoodcompubio.com\/index.php\/gene_sets\/","title":{"rendered":"Gene Sets"},"content":{"rendered":"\n\n\n\n<\/title>\n\n <link rel=\"stylesheet\" href=\"\/\/code.jquery.com\/ui\/1.13.2\/themes\/base\/jquery-ui.css\">\n<script src=\"https:\/\/code.jquery.com\/jquery-3.6.0.min.js\"><\/script>\n<script src=\"https:\/\/code.jquery.com\/jquery-migrate-1.4.1.min.js\"><\/script>\n <script src=\"https:\/\/code.jquery.com\/ui\/1.13.2\/jquery-ui.js\"><\/script>\n\n\n\n<link rel=\"stylesheet\" href=\"https:\/\/cdn.jsdelivr.net\/npm\/bootstrap@4.5.3\/dist\/css\/bootstrap.min.css\" integrity=\"sha384-TX8t27EcRE3e\/ihU7zmQxVncDAy5uIKz4rEkgIXeMed4M0jlfIDPvg6uqKI2xXr2\" crossorigin=\"anonymous\">\n<script src=\"https:\/\/cdn.jsdelivr.net\/npm\/bootstrap@4.5.3\/dist\/js\/bootstrap.bundle.min.js\" integrity=\"sha384-ho+j7jyWK8fNQe+A12Hb8AhRq26LrZ\/JpcUGGOn+Y7RsweNrtN\/tE3MoK7ZeZDyx\" crossorigin=\"anonymous\"><\/script>\n\n<link rel=\"stylesheet\" type=\"text\/css\" href=\"https:\/\/cdn.datatables.net\/v\/dt\/dt-1.13.1\/datatables.min.css\"\/>\n \n<script type=\"text\/javascript\" src=\"https:\/\/cdn.datatables.net\/v\/dt\/dt-1.13.1\/datatables.min.js\"><\/script>\n\n\n<style>\n body{\n font-family: Arial, sans-serif;\n }\n\n.search-box , .div-py{\n margin:5%;\n margin-left:10%;\n width: 80%;\n position: relative;\n display:inline-block;\n font-size: 22px;\n padding-bottom: 0px;\n }\n .search-box select , .div-py select {\n height: 60px;\n padding: 5px 10px;\n border: 1px solid #CCCCCC;\n font-size: 22px;\n max-height: 100px;\n background-color:#DFDEDE;\n }\n .search-box input[type=\"text\"] {\n height: 60px;\n padding: 5px 10px;\n border: 1px solid #CCCCCC;\n font-size: 22px;\n max-height: 100px;\n background-color:#DFDEDE;\n }\n .search-box input[type=\"number\"] { \n height: 60px;\n padding: 5px 10px;\n border: 1px solid #CCCCCC;\n font-size: 22px;\n max-height: 100px;\n background-color:##DFDEDE;\n }\n .result{\n z-index: 999;\n top: 100%;\n left: 0;\n overflow: auto;\n opacity: 1;\n }\n .search-box input[type=\"text\"], .result{\n width: 100%;\n box-sizing: border-box;\n max-height: 115px;\n opacity: 1;\n }\n .result p{\n margin: 0;\n padding: 7px 10px;\n border: 1px solid #CCCCCC;\n border-top: none;\n cursor: pointer;\n max-height: 100px;\n }\n .result p:hover{\n background: #f2f2f2;\n max-height: 100px;\n }\n\n .button{ \n float:right; \n background-color: #4CAF50; \n border: none;\n color: white;\n height: 10%;\n text-align: center;\n text-decoration: none;\n font-size: 10px;\n }\n#carouseldiv{\n display: inline-block;\n}\n\ninput[type=\"radio\"]{\n height: 20px;\n width: 15px;\n}\n.site-content{\n height: auto;\n}\n\n\n#selectdata h3{\n display:inline;\n}\n\n\n #gifbt {\n position: absolute;\n left: 45%;\n top: 60%;\n width: 5%;\n height: 50%;\n }\n #gifbt2 {\n position: absolute;\n left: 45%;\n top:40%;\n width: 5%;\n height: 10%;\n }\n \n\n .form-control:focus {\n border-color: #0000FF;\n box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(102,205,170, 0.6);\n}\n\n #column , .search-py{\n background-color:white;\n width: 100%;\n border-radius: 10px;\n \/*box-shadow: 5px 10px #f1f1f1;*\/\n \n }\n \n #divtable ,#divtable2 , #divtable3{\n background-color:white; \n border-radius: 10px;\n font-size:22px; \nwidth:auto; \nmargin-top:2%;\n }\n \n\n #titletable{\n margin-top:2%;\n text-align:center; \n }\n #selectdata h2{\n display:inline; \n text-align:center; \n font-size:2em;\n\n\n }\n #divtable h2 , #divtable2 h2 , #divtable3 h2 {\n display:inline; \n }\n#divtable .dataTables_wrapper,\n#divtable2 .dataTables_wrapper ,\n#divtable3 .dataTables_wrapper{\n width: 80%;\n margin: 2%;\n margin-left: 10%;\n margin-right: 10%;\n font-size:22px;\n}\nh1 {\n font-size:2em;\n}\n\n .helpresult{\n z-index: 999;\n top: 100%;\n left: 10%;\n overflow: auto;\n opacity: 1;\n }\n #divtable p , #divtable2 p , #divtable3 p {\n color: black !important ;\n }\n .helpresult p , .helpresult h2 , #enrichp{\n font-size:0.9vw;\n margin: 0;\n margin-left:2%;\n font-style:italic;\n max-height: 100px;\n }\n \n .dataTables_length, .dataTables_length select\n { \n font-size: 1.5em;\n \n }\n .popover{\n font-size: 2em;\n\n }\n caption {\n text-align:center;\n font-style:italic;\n caption-side:top;\n }\n #modaldesc , #modaldesc2 {\ntop:10%;\n}\n.btn-secondary{\n width:20%;\n font-size:16px;\n margin-left:10%;\n}\n\n.btn-primary {\n width:10%;\n font-size:16px;\n margin-left:40%;\n }\n\n\n \n<\/style>\n<\/head>\n<body>\n\n\n\n\n<script>\njQuery(document).ready(function($) {\n $('[data-toggle=\"popover\"]').popover();\n var info = $('.info');\n info.mouseenter(function() {\n $(this).popover('show');\n });\n \/\/ Hide the popover when the user's mouse leaves the button\n info.mouseleave(function() {\n $(this).popover('hide');\n });\n \n var thead = $('th');\n thead.mouseenter(function() {\n $(this).popover('show');\n });\n thead.mouseleave(function() {\n $(this).popover('hide');\n });\n })\n<\/script>\n\n<div id=\"column\">\n\n<div class=\"search-box\">\n\n Food or bioactive compound <img id=\"datahelp1\" class=\"help \"src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\" \/>\n <div class=\"helpresult\" id=\"help1\"><\/div>\n <input type=\"text\" id=\"key\" class=\"key form-control\" placeholder='Resveratrol'>\n <div class=\"result\" id=\"result\"><\/div>\n <br>\n Cell line\/Sample type <img id=\"datahelpsample\" class=\"help \"src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\" \/>\n <div class=\"helpresult\" id=\"helpsample\"><\/div>\n <input type=\"text\" id=\"origen\" class=\"key form-control\" placeholder=''>\n <div class=\"result\" id=\"result2\"><\/div>\n<\/div> \n <\/div>\n\n <div id='divtable'>\n\n<table id=\"table\" class=\"hover\" style=\"width:100%\">\n <caption> Click in the row of interest to get more information <\/caption>\n <thead><\/thead>\n<\/table>\n<\/div>\n\n <img decoding=\"async\" id=\"gifbt2\" src=\"https:\/\/upload.wikimedia.org\/wikipedia\/commons\/2\/2a\/Loading_Key.gif\" width=\"250\" \/>\n\n\n <div id='divtable2'>\n <div class=\"modal fade\" id=\"modaldesc\" role=\"dialog\">\n <div class=\"modal-dialog\">\n <div class=\"modal-content\">\n <div class=\"modal-header\">\n <button type=\"button\" class=\"close\" data-dismiss=\"modal\" aria-label=\"Close\">\n <span aria-hidden=\"true\">×<\/span>\n <\/button>\n <\/div>\n <div class=\"modal-body\">\n <button type=\"button\" id='copy' class=\"btn btn-secondary\">copy\n <img id=\"datahelpcopy\" class=\"help \"src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\" \/> \n <\/button>\n <button type=\"button\" id='tsv' class=\"btn btn-secondary\">TSV<\/button>\n <button type=\"button\" id='csv' class=\"btn btn-secondary\">CSV<\/button>\n \n <div class=\"helpresult\" id=\"helpcopy\"><\/div>\n\n <\/div>\n <\/div>\n <\/div>\n<\/div>\n\n <br>\n<h1 id='titletable'>Upregulated genes<\/h1>\n<button type=\"button\" class=\"btn btn-primary\" data-toggle=\"modal\" data-target=\"#modaldesc\">\nDownload\n<\/button>\n<table id=\"table1\" class=\"stripe\" style=\"width:100%\">\n<\/table>\n<\/div>\n\n <div id='divtable3'>\n <div class=\"modal fade\" id=\"modaldesc2\" role=\"dialog\">\n <div class=\"modal-dialog\">\n <div class=\"modal-content\">\n <div class=\"modal-header\">\n <button type=\"button\" class=\"close\" data-dismiss=\"modal\" aria-label=\"Close\">\n <span aria-hidden=\"true\">×<\/span>\n <\/button>\n <\/div>\n <div class=\"modal-body\">\n <button type=\"button\" id='copy' class=\"btn btn-secondary\">copy\n <img id=\"datahelpcopy2\" class=\"help \"src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\" \/> \n <\/button>\n <button type=\"button\" id='tsv' class=\"btn btn-secondary\">TSV<\/button>\n <button type=\"button\" id='csv' class=\"btn btn-secondary\">CSV<\/button>\n \n <div class=\"helpresult\" id=\"helpcopy2\"><\/div>\n\n <\/div>\n <\/div>\n <\/div>\n<\/div>\n\n <br>\n<h1 id='titletable'>Downregulated genes<\/h1>\n<button type=\"button\" class=\"btn btn-primary\" data-toggle=\"modal\" data-target=\"#modaldesc2\">\nDownload\n<\/button>\n<table id=\"table2\" class=\"stripe\" style=\"width:100%\">\n\n \n<\/table>\n <\/div>\n\n <div class=\"search-py\">\n <div class=\"div-py\">\n <div id=\"selectdata\"><h2>Pathway enrichment analysis<\/h2> <img id=\"datahelpenrich\" class=\"help \"src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\" \/>\n <div class=\"helpresult\" id=\"helpenrich\"><\/div>\n <p id='enrichp'>Click on the box to display the differents pathways options<\/p>\n<select id=\"selecten\">\n <option value=\"wiky\">WIKIPATHWAYS<\/option>\n<option value=\"molecular\">GO MOLECULAR FUNCTION<\/option>\n<option value=\"biological\">GO BIOLOGICAL PROCESS<\/option>\n<option value=\"celullar\">GO CELULAR COMPONENT<\/option>\n<option value=\"reactome\">REACTOME<\/option>\n<\/select>\n<img decoding=\"async\" id=\"gifbt\" src=\"https:\/\/upload.wikimedia.org\/wikipedia\/commons\/2\/2a\/Loading_Key.gif\" width=\"250\" \/>\n<br>\n<button id=\"enrichment\" class=\"button\" >Run enrichment analysis<\/button>\n<br>\n<\/div>\n<\/div>\n\n\n\n\n\n\n\n\n\n<script>\n \/\/ Define variables and set hide values for css\n$(\"#gifbt\").hide();\n$(\".search-py\").hide();\n$(\"#gifbt2\").hide();\n\n $(\"#divtable\").hide();\n $(\"#divtable2\").hide();\n $(\"#divtable3\").hide();\n\n $(\"#headertable\").hide();\n $(\"#data\").hide();\n $(\"#data2\").hide();\n $(\"#data3\").hide();\n var valortrue = false;\n $(\".tituloupdn\").hide();\n var datosup=[];\n var datosdn=[];\n var d2=[];\n $(\".descarga\").hide();\n var arraynom = [\"accession\" ,\"node_id\",\"treatment\",\"time_point\",\"concentration\", \"origin_name\"];\n var arraynom2 = [\"Entrezgene_ID\",\"External_Gene_Name\",\"Description\"];\nvar verdadero=false;\nvar idloaddata2 =1;\nvar pathway;\nvar longi2;\nvar nregis=2;\nvar dataset;\nvar nregis2=10;\nvar nregis3=10;\nvar datasecure2={};\nvar datasecure3={};\nvar datanew = {};\nvar datanew2 = {};\nvar datanew3 = {};\nvar datos={};\nvar datos2={};\nvar datos4={};\nvar type=2;\nvar botonvalor =\"fdrug\";\nvar provisional=1;\nvar datacharge=true;\nvar datacharge2=true;\nvar datacharge3=true;\nvar table;\nvar table2;\nvar table3;\nvar orden=\"\";\n var datadescarga2 ={};\n var datadescarga={};\n \n \n \njQuery(document).ready(function($) {\n\n\n \/\/Keyup event to fill the div which will show the autocomplete suggestions\n $('.key').on('keyup input', function() { \n \/\/We get the value and the id of the input.\nvar key = $(this).val();\norden = $(this).attr(\"id\");\n\/\/We check that the value is not null or empty\nif(key != \"\"){\n \/\/We make a request to ajax that redirects us to another script where the Mysql query will be executed and will return the first 5 records similar to what is being searched for\n jQuery.ajax({\n url:'https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/geneset\/ajaxsql.php',\n type: 'post',\n data: {search:key, type:1,orden:orden},\n dataType: 'json',\n success:function(response){\n \/\/Here in this if we check which of the two inputs is the one being written\n \/\/We get the length of the response and add one by one the response in the div\n if (orden==\"key\") {\n var len = response.length;\n $(\"#result\").empty();\n for( var i = 0; i<len; i++){\n var name = response[i]['name'];\n $(\"#result\").append(\"<p>\"+name+\"<\/p>\");\n } \n }else {\n var len = response.length;\n $(\"#result2\").empty();\n for( var i = 0; i<len; i++){\n var name = response[i]['name'];\n $(\"#result2\").append(\"<p>\"+name+\"<\/p>\");\n }\n }\n }, error: function(XMLHttpRequest, textStatus, errorThrown) { \n alert(\"Status: \" + textStatus); alert(\"Error: \" + errorThrown); \n } \n });\n}else {\n \/\/If the answer is empty, the result is cleaned\n $(\".result\").empty();\n}\n})\n\n\/\/Help events, when the event is activated the text is shown to indicate the instructions and when it ends everything is hidden\n\n$(document).on(\"mouseenter\", \".help\", function(){\n$(\".helpresult\").empty();\nvar idhelp = $(this).attr(\"id\");\nif (idhelp==\"datahelp1\") {\n $(\"#help1\").append(\"<p>Type the term of interest. If FooDrugs database doesn't have experiments with the query term a \u201cNo Results Found\u201d message will appear.<\/p>\");\n \n} else if (idhelp==\"datahelpsample\") {\n $(\"#helpsample\").append(\"<p>Allow you to filter by cell line or sample type. If FooDrugs database doesn't have cell lines or sample types with the query term a \u201cNo Results Found\u201d message will appear.<\/p>\");\n\n}\nelse if (idhelp==\"datahelpentries\") {\n $(\"#helpentries\").append(\"<p>Allow you to filter the number of studies to display<\/p>\");\n \n} \nelse if (idhelp==\"datahelpfilter\") {\n $(\"#helpfilter\").append(\"<p>Allow you to filter with free text on the table by any field<\/p>\");\n \n} else if (idhelp==\"datahelpentries2\") {\n $(\"#helpentries2\").append(\"<p>Allow you to filter the number of studies to display<\/p>\");\n \n} \nelse if (idhelp==\"datahelpfilter2\") {\n $(\"#helpfilter2\").append(\"<p>Allow you to filter with free text on the table by any field<\/p>\");\n \n}else if (idhelp==\"datahelpentries3\") {\n $(\"#helpentries3\").append(\"<p>Allow you to filter the number of studies to display<\/p>\");\n \n} \nelse if (idhelp==\"datahelpfilter3\") {\n $(\"#helpfilter3\").append(\"<p>Allow you to filter with free text on the table by any field<\/p>\");\n \n}\nelse if(idhelp==\"datahelpenrich\"){\n $(\"#helpenrich\").append(\"<p>Allow to perform enrichment analysis with the top overexpressed and underexpressed genes showed in the tables.<\/p>\");\n\n}else if (idhelp==\"datahelpcopy\"){\n $(\"#helpcopy\").append(\"<p>Allow to copy the information on the clipboard<\/p>\");\n\n}else if (idhelp==\"datahelpcopy2\"){\n $(\"#helpcopy2\").append(\"<p>Allow to copy the information on the clipboard<\/p>\");\n\n}\n\n\n\n});\n\n $(document).on(\"mouseleave\", \".help\", function(){\n $(\".helpresult\").empty();\n });\n\n\/\/Events to go up or down in the page\n $(document).on(\"mouseover\", \"#gncontainer3\", function(){\n $(\"#cambioupdn\").text(\"UP\");\n $(\"#cambioupdn\").attr('href', '#headertable2');\n });\n \n $(document).on(\"mouseover\", \"#gncontainer2\", function(){\n $(\"#cambioupdn\").text(\"DN\");\n $(\"#cambioupdn\").attr('href', '#headertable3');\n });\n \n\/\/CLICK event on any of the input options\n$(document).on(\"click\", \".result p\", function(){\n \/\/Check what input is clicked and call showtables function\n if (orden==\"key\") {\n $('#result').empty(); \n $('#'+orden).val($(this).text());\n mostrartablas();\n\n }else{\n $('#result2').empty(); \n $('#'+orden).val($(this).text());\n \/\/Check the value of the first input to call the function\n if ($('#key').val()!=null) {\n mostrartablas();\n }\n }\n });\n\n\n\n\n\n\n\/\/Function mostrartablas \n\nfunction mostrartablas(){\n \/\/Get the value of the two inputs\n\n var key = $('#key').val();\n var key2 = $(\"#origen\").val();\n valortrue = false;\n $.ajax({\n url:'https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/geneset\/ajaxsql.php',\n type: 'post',\n data: {search:key,search2:key2, type:3},\n dataType: 'json',\n success:function(response){\n console.log(response)\n \/\/Get the values \u200b\u200bfrom the ajax response and set, check and display the various parameters\/variables\n let pages = 0;\n datos['a']=response;\n datanew=response;\n datos['type']=type;\n $(\"#headertable\").show();\n $(\"#pagination_data\").empty();\n $(\"#content\").empty();\n var len = response.length;\n if ((response[0]['compound'] != undefined && response[0]['treatment'] == undefined) || (response[0]['treatment'] != undefined && response[0]['compound'] == undefined) ) {\n var datatable = [];\n \n \n for (let index = 0; index < response.length; index++) {\n datatable[index]=[];\nfor (var value in response[index]){ \n datatable[index].push(response[index][value]);\n}\n}\nif(datacharge==true){\n datacharge=false;\n}else {\n table.destroy();\n}\n $(\"#table\").show();\n\n table = $('#table').DataTable({\n \n\n data: datatable,\n \n columns: [\n { title: \"<span tabindex='0' data-toggle='popover' data-content='GEO study identifier click on the word to go to the original information source'> Accession <img src='http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png' width='15' \/> <\/span>\" ,\n \"render\": function (data, type, row) {\n return '<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/geo\/query\/acc.cgi?acc=GSE' + data + '\" target=\"no_blank\">' + data + '<\/a>';\n }\n },\n { title: \"Treatment\" },\n { title: \"Time Point\" },\n { title: \"Concentration\" },\n { title: \"Cell line\/Sample type\" },\n \n ],\n language: {\n \"lengthMenu\": '<h2> Show entries <\/h2> <img decoding=\"async\" class=\"help\" id=\"datahelpentries\" src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\"><\/img> <div class=\"helpresult\" id=\"helpentries\"><\/div> _MENU_ ' ,\n \"search\": ' <h2> Filter Records<\/h2> <img decoding=\"async\" class=\"help\" id=\"datahelpfilter\" src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\"><\/img> <div class=\"helpresult\" id=\"helpfilter\"><\/div> _INPUT_' \n },\n });\n \n $('[data-toggle=\"popover\"]').popover({\n 'trigger': 'hover',\n});\n$(\"#divtable\").show();\n }\n } ,error: function(XMLHttpRequest, textStatus, errorThrown) { \n alert(\"Status: \" + textStatus); alert(\"Error: \" + errorThrown); \n } \n });\n}\n\n\n\n\n\n\/\/--->\n\/\/Function load_data , load_data2 and load_data3 are used to load the information to the tables shown on the page a is equal to the current page\n\/\/the same for all functions\n\n\n function load_data2(){\n $(\"#divtable2\").show();\n var d2 = [];\n var ids = [];\n j=0;\n for( var i = 0; i<datanew2.length; i++){\n d2[j]=datanew2[i].split('\\t');\n id=d2[j][0];\n if(!ids.includes(id)){\n ids.push(id);\n for (var key in datosresponse['up'][id]) { \n d2[j].push(datosresponse['up'][id][key]);\n }\n }\n if(d2[j].length!=6){\n d2.splice(j, 1);\n \n j--\n \n }\n j++;\n\n\n }\n datanew2=d2;\n if(datacharge2==true){\n datacharge2=false;\n}else {\n table2.destroy();\n}\n\n table2 = $('#table1').DataTable({\n data: d2,\n columns: [\n { title: \"<span id='tablepopover' tabindex='0' data-toggle='popover' data-content='To know more about the gene click on it '> EntrezGene ID <img src='http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png' width='15' \/> <\/span>\" ,\n \"render\": function (data, type, row) {\n return '<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/gene\/' + data + '\" target=\"no_blank\">' + data + '<\/a>';\n }\n \n },\n { title: \"External Gene Name\" },\n { title: \"Description \", \"width\": \"25%\" },\n { title: \"logFC\" ,\n \"render\": function (data, type, row) {\n return round(data);\n }\n },\n { title: \"Adjusted P_Value\",\n \"render\": function (data, type, row) {\n return round(data);\n }},\n { title: \"P_Value\" ,\n \"render\": function (data, type, row) {\n return round(data);\n }\n },\n ],\n language: {\n \"lengthMenu\": '<h2> Show entries <\/h2> <img decoding=\"async\" class=\"help\" id=\"datahelpentries2\" src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\"><\/img> <div class=\"helpresult\" id=\"helpentries2\"><\/div> _MENU_' ,\n \"search\": ' <h2> Filter Records<\/h2> <img decoding=\"async\" class=\"help\" id=\"datahelpfilter2\" src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\"><\/img> <div class=\"helpresult\" id=\"helpfilter2\"><\/div> _INPUT_' \n },\n });\n \n $('[data-toggle=\"popover\"]').popover({\n 'trigger': 'hover',\n});\n }\n \nfunction round(num) {\n var m = Number((Math.abs(num) * 1000).toPrecision(15));\n return Math.round(m) \/ 1000 * Math.sign(num);\n}\n function load_data3(){\n $(\"#divtable3\").show();\n\n var d3 = [];\n j=0\n var ids = [];\n for( var i = 0; i<datanew3.length; i++){\n d3[j]=datanew3[i].split('\\t');\n id=d3[j][0];\n if(!ids.includes(id)){\n ids.push(id);\n for (var key in datosresponse['dn'][id]) { \n d3[j].push(datosresponse['dn'][id][key]);\n }\n }\n if(d3[j].length!=6){\n d3.splice(j, 1);\n j--\n \n }\n j++;\n \n \n }\n \n if(datacharge3==true){\n datacharge3=false;\n}else {\n table3.destroy();\n}\n table3 = $('#table2').DataTable({\n data: d3,\n columns: [\n { title: \"<span id='tablepopover' tabindex='0' data-toggle='popover' data-content='To know more about the gene click on it '> EntrezGene ID <img src='http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png' width='15' \/> <\/span>\" ,\n \"render\": function (data, type, row) {\n return '<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/gene\/' + data + '\" target=\"no_blank\">' + data + '<\/a>';\n }\n \n },\n { title: \"External Gene Name\" },\n { title: \"Description \", \"width\": \"25%\" },\n{ title: \"logFC\" ,\n \"render\": function (data, type, row) {\n return round(data);\n }\n },\n { title: \"Adjusted P_Value\",\n \"render\": function (data, type, row) {\n return round(data);\n }},\n { title: \"P_Value\" ,\n \"render\": function (data, type, row) {\n return round(data);\n }\n },\n ],\n language: {\n \"lengthMenu\": '<h2> Show entries <\/h2> <img decoding=\"async\" class=\"help\" id=\"datahelpentries3\" src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\"><\/img> <div class=\"helpresult\" id=\"helpentries3\"><\/div> _MENU_' ,\n \"search\": ' <h2> Filter Records<\/h2> <img decoding=\"async\" class=\"help\" id=\"datahelpfilter3\" src=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/06\/icon1.png\" width=\"15\"><\/img> <div class=\"helpresult\" id=\"helpfilter3\"><\/div> _INPUT_' \n },\n });\n $('[data-toggle=\"popover\"]').popover({\n 'trigger': 'hover',\n});\n }\n\/\/<---\n\n\n\/\/table click event \n $(document).on('click', '#table tbody tr', function() { \n$(\".highlight\").css({'background-color': \"transparent\" });\n $( '.highlight' ).removeClass( \"highlight\" );\n $(this).css(\"background-color\",\"#CDCDCD\");\n var row = table.row( this ).data()\n $( this ).addClass( \"highlight\" );\n var nodeid = row[5];\n var x;\n $(\"#gifbt2\").show();\n\/\/First make an ajax request and get the up and dn nodes\n \/\/These data are stored in an array and sent to a script that will obtain and save the information obtained\n \/\/Then we make another request to read the created file\n $.ajax({\n url:'https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/geneset\/ajaxsql.php',\n type: 'post',\n data: {search:nodeid, type:2},\n dataType: 'json',\n success:function(response){\n datos2={};\n datosresponse={}\n datos2=response;\n datosresponse['up']={};\n console.log(datos2.length);\n datosresponse['dn']={};\n for( var i = 0; i< datos2.length; i++){\n iddn=\"\";\n if(datos2[i]['up']!=null){\n idup=\"\";\n idup=datos2[i]['up']['id'];\n datosup[i]=idup;\n datosresponse['up'][idup]=datos2[i]['up'][idup];\n }\n if(datos2[i]['dn']!=null){\n iddn=\"\";\n iddn=datos2[i]['dn']['id'];\n datosdn[i]=iddn;\n datosresponse['dn'][iddn]=datos2[i]['dn'][iddn];\n }\n }\n console.log(datosdn);\n valortrue = true;\n $.post('https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/geneset\/python.php', {idup:datosup,iddn:datosdn,type:1}).done(function(data){\n x=true;\n \n });\n \n $.ajax({\n url:'https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/geneset\/lectura.php',\n type: 'post',\n dataType: 'json',\n success:function(response){\n datanew2=\"\";\n datanew3=\"\";\n\/\/ The data is parsed to save it in an array and the blank spaces are deleted\ndatanew2=response['up'].split('\\n');\n datanew3=response['dn'].split('\\n');\n datanew2=datanew2.filter(function(n){return n; });\n datanew3=datanew3.filter(function(n){return n; });\n fundatadescarga();\nload_data2();\nload_data3();\n $(\"#gifbt2\").hide();\n $(\".search-py\").show();\n } }); \n \n }});\n }); \n\n\n\n\n\n\n\n\n\/\/Enrichment event\n$(document).on(\"click\", \"#enrichment\", function(){\n\/\/First it is verified that the things have been executed, then the values \u200b\u200bof the select are obtained\n if(valortrue==true){\n $(\"#gifbt\").show();\n var select = $(\"#selecten\");\n pathway=\"\";\n id=select.val();\n\/\/Depending on the id you have, one thing or another is executed\n\/\/type 2 for any of the options except for reactome\n if (id==\"molecular\") {\ntype=2;\ndataset=\"0003674\";\nenviar(dataset,type,pathway);\n }else if (id==\"biological\") {\n type=2; \n dataset=\"0008150\";\n enviar(dataset,type,pathway);\n }else if (id==\"celullar\") {\n type=2;\n dataset=\"0005575\";\n enviar(dataset,type,pathway);\n }else if (id==\"reactome\"){\n\/\/A first connection is made with reactome to obtain the token and be able to obtain all the pertinent data later\n var reactomeURI = 'https:\/\/reactome.org\/AnalysisService\/identifiers\/projection\/\\?pageSize\\=1\\&page\\=1';\n var dupnew = datosup.join(\"\\n\")\n\t\t\t\tvar dataUrl = '#EntrezGene\\n'+dupnew;\n\t\t\t\t$.ajax({\n\t\t\t\t\ttype: \"post\",\n\t\t\t\t\turl: reactomeURI,\n\t\t\t\t\tdata: dataUrl,\n\t\t\t\t\theaders: {\n\t\t\t\t\t\t\"Content-Type\": \"text\/plain\"\n\t\t\t\t\t},\n\t\t\t\t\tdataType: \"json\",\n\t\t\t\tsuccess:function(response){\n\t\t\t\tpathway=(response.pathwaysFound);\n\t dataset=response.summary.token;\n\/\/The second connection is made with reactome in type 3 obtaining the up genes\n\t $.post('https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/geneset\/python.php', {idup:datosup,iddn:datosdn,type:3,dataset:dataset,pathway:pathway}).done(function(data){\n\t });\n\t\t\t\t}\n\t\t\t\t});\n\t\t\t\n var ddnnew = datosdn.join(\"\\n\")\n\t\t\t\tvar dataUrl2 = '#EntrezGene\\n'+ddnnew;\n\t\t\t\t$.ajax({\n\t\t\t\t\ttype: \"post\",\n\t\t\t\t\turl: reactomeURI,\n\t\t\t\t\tdata: dataUrl2,\n\t\t\t\t\theaders: {\n\t\t\t\t\t\t\"Content-Type\": \"text\/plain\"\n\t\t\t\t\t},\n\t\t\t\t\tdataType: \"json\",\n\t\t\t\tsuccess:function(response){\n\/\/Type 4 is executed to obtain the dn genes\n\t\t\t\tpathway=(response.pathwaysFound);\n\t dataset=response.summary.token;\n\t type=4;\n\t \n\t enviar(dataset,type,pathway);\n\t\t\t\t}\n\t\t\t\t});\n }\n else if (id==\"wiky\") {\n $.post('https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/enrichment\/install.php').done(function(data){\n var url = 'http:\/\/imdeafoodcompubio.com\/index.php\/enrichment_geneset\/' ;\n var form = $('<form action=\"' + url + '\" method=\"post\" target=\"_blank\">' +\n '<input type=\"text\" name=\"text\"\/>' +\n '<\/form>');\n form.hide();\n $('body').append(form);\n form.submit(); \n $(\"#gifbt\").hide();\n });\n }\n }\n});\n\n\n\/\/ Send function is passed the dataset that has the database, the type that has to execute the script\n\/\/ and the pathway that only works for the reactome option\nfunction enviar(dataset,type,pathway){\n $.post('https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/geneset\/python.php', {idup:datosup,iddn:datosdn,type:type,dataset:dataset,pathway:pathway,database:id}).done(function(data){\n\/\/after obtaining the data, a form is executed that leads us to a page with the new information\n var url = 'http:\/\/imdeafoodcompubio.com\/index.php\/enrichment_geneset\/' ;\n var form = $('<form action=\"' + url + '\" method=\"post\" target=\"_blank\">' +\n '<input type=\"text\" name=\"text\"\/>' +\n '<\/form>');\n form.hide();\n $('body').append(form);\n form.submit(); \n $(\"#gifbt\").hide();\n });\n \n }\n \n\n\n\n\n\/\/Funcion para parsear la informacion para que el usuario pueda descargarla\n\/\/Se realiza un split de la informacion del array se almacena en una matriz\nfunction fundatadescarga (){\n \n for( var i = 0; i<datasecure2.length; i++){\n var d2=datasecure2[i].split('\\t'); \n datadescarga[i]=[];\n for (let j = 0; j < d2.length; j++) {\n \n \n datadescarga[i][j]=d2[j];\n \n \n }\n }\n for( var i = 0; i<datasecure3.length; i++){\n var d2=datasecure3[i].split('\\t'); \n datadescarga2[i]=[];\n for (let j = 0; j < d2.length; j++) {\n \n datadescarga2[i][j]=d2[j];\n }\n }\n\n}\n\n\n\/*\n$('.key').on('keyup click', function() { \n var key = $(this).val();\n if (key=='') {\n var stringclick = '';\n orden = $(this).attr(\"id\");\n jQuery.ajax({\n url:'https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/geneset\/ajaxsql.php',\n type: 'post',\n data: {search:stringclick, type:1,orden:orden},\n dataType: 'json',\n success:function(response){\n \/\/Here in this if we check which of the two inputs is the one being written\n \/\/We get the length of the response and add one by one the response in the div\n if (orden==\"key\") {\n var len = response.length;\n $(\"#result\").empty();\n for( var i = 0; i<len; i++){\n var name = response[i]['name'];\n $(\"#result\").append(\"<p>\"+name+\"<\/p>\");\n } \n }else {\n var len = response.length;\n $(\"#result2\").empty();\n for( var i = 0; i<len; i++){\n var name = response[i]['name'];\n $(\"#result2\").append(\"<p>\"+name+\"<\/p>\");\n }\n }\n }, error: function(XMLHttpRequest, textStatus, errorThrown) { \n alert(\"Status: \" + textStatus); alert(\"Error: \" + errorThrown); \n }\n });\n }\n}); *\/\n\n$(document).on('click', '#modaldesc .btn-secondary', function() {\n \/\/Get the page where you are and what type of download it iss\n var subid= $(this).attr(\"id\");\n\/\/Copy with the obtained data, with this it is added to an input and the copy command is executed later the input is deleted\n \/\/ With this is on the clipboard\n\/\/We remove the fields from the strati num text yendi array so that there is no information \/\/irrelevant for the user\n if (subid == \"copy\" ) {\n dataacopiar=[];\n copy=\"\";\n for (let i = 0; i < datanew2.length || i < 10 ; i++) {\n dataacopiar[i]={};\n for (var dato in datanew2[i]){\n copy=copy+datanew2[i][dato];\n\n}\n}\n $('<input id=\"textcopy\">').val(copy).appendTo('body').select(); \n document.execCommand('copy'); \n var el = document.getElementById('textcopy');\n el.remove();\n }\n \/\/TSV OR CSV the file is sent to descargararchivo.php and the associative array is sent\n else {\n dataacopiar=[];\n console.log(datanew2);\n for (let i = 0; i < datanew2.length; i++) {\n dataacopiar[i]={};\n for (var dato in datanew2[i]){\n dataacopiar[i][dato]=datanew2[i][dato];\n\n}\n}\n $.ajax({\n url:'https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/descargararchivo.php',\n type: 'post',\n data: {key:subid,data:dataacopiar,name:\"tablegenesetup\",arrkeys:arraynom2},\n dataType: 'json',\n success:function(response){\n \/\/Get the name of the file which is on the response and create an element <a> and add the attribute\n \/\/'download' and indicate where the file is located and order the element to be clicked\n \/\/and start the download\n fileName=response;\n fileUrl=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/desc\/\"+fileName;\n var a = document.createElement(\"a\");\n a.href = fileUrl;\n a.setAttribute(\"download\", fileName);\n a.click();\n }\n });\n }\n });\n\n\n$(document).on('click', '#modaldesc2 .btn-secondary', function() {\n \/\/Get the page where you are and what type of download it iss\n var subid= $(this).attr(\"id\");\n\/\/Copy with the obtained data, with this it is added to an input and the copy command is executed later the input is deleted\n \/\/ With this is on the clipboard\n\/\/We remove the fields from the strati num text yendi array so that there is no information \/\/irrelevant for the user\n if (subid == \"copy\" ) {\n dataacopiar=[];\n copy=\"\";\n for (let i = 0; i < datanew3.length || i < 10 ; i++) {\n dataacopiar[i]={};\n for (var dato in datanew3[i]){\n copy=copy+datanew3[i][dato];\n\n}\n}\n $('<input id=\"textcopy\">').val(copy).appendTo('body').select(); \n document.execCommand('copy'); \n var el = document.getElementById('textcopy');\n el.remove();\n }\n \/\/TSV OR CSV the file is sent to descargararchivo.php and the associative array is sent\n else {\n dataacopiar=[];\n console.log(datanew2);\n for (let i = 0; i < datanew3.length; i++) {\n dataacopiar[i]={};\n for (var dato in datanew3[i]){\n dataacopiar[i][dato]=datanew3[i][dato];\n\n}\n}\n $.ajax({\n url:'https:\/\/imdeafoodcompubio.com\/wp-content\/themes\/bento-child\/descargararchivo.php',\n type: 'post',\n data: {key:subid,data:dataacopiar,name:\"tablegenesetdn\",arrkeys:arraynom2},\n dataType: 'json',\n success:function(response){\n \/\/Get the name of the file which is on the response and create an element <a> and add the attribute\n \/\/'download' and indicate where the file is located and order the element to be clicked\n \/\/and start the download\n fileName=response;\n fileUrl=\"http:\/\/imdeafoodcompubio.com\/wp-content\/uploads\/2022\/desc\/\"+fileName;\n var a = document.createElement(\"a\");\n a.href = fileUrl;\n a.setAttribute(\"download\", fileName);\n a.click();\n }\n });\n }\n });\n\n\n });\n\n <\/script>\n\n<\/body>\n<\/html>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-15","page","type-page","status-publish","hentry","no-thumb"],"_links":{"self":[{"href":"https:\/\/imdeafoodcompubio.com\/index.php\/wp-json\/wp\/v2\/pages\/15","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/imdeafoodcompubio.com\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/imdeafoodcompubio.com\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/imdeafoodcompubio.com\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/imdeafoodcompubio.com\/index.php\/wp-json\/wp\/v2\/comments?post=15"}],"version-history":[{"count":3,"href":"https:\/\/imdeafoodcompubio.com\/index.php\/wp-json\/wp\/v2\/pages\/15\/revisions"}],"predecessor-version":[{"id":604,"href":"https:\/\/imdeafoodcompubio.com\/index.php\/wp-json\/wp\/v2\/pages\/15\/revisions\/604"}],"wp:attachment":[{"href":"https:\/\/imdeafoodcompubio.com\/index.php\/wp-json\/wp\/v2\/media?parent=15"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}